PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013503-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 357aa    MW: 38549.3 Da    PI: 5.2692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013503-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14121172155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  NNU_013503-RA 121 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 172
                    79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.74E-16118176No hitNo description
SuperFamilySSF474591.57E-18119195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-14119175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDDSLSDIFY ETEFTDTSFT GGASPDDLFS IFDSLEVEGA PEFAPLTPLG ETVLRPKGGS  60
TGGSSCEDST RLVSQKPTSS STAQQQDTDT GVEASPPSKR PKLSSATAIA SSDEPPQDGQ  120
QRMSHITVER NRRKQMNEHL SVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLQSLEA  180
KKQRKAYSEV LSPRLVSSPR PSPLSPRKPP LSPRLSLPPI SPRTPQPGSP YKPRTSSQQG  240
YPSPTQLAAA TSHESSLSTC SSFDSSAKEL WANSKSAIAD VEVKLSGSNV LLKTISPRIP  300
GQALKIVATL ESLPLEILHV SISTVDDTML NSFTIKIGIE CELSAEELAH EIQQTFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121132RMSHITVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266461.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-109SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLB9RIM01e-146B9RIM0_RICCO; DNA binding protein, putative
STRINGVIT_16s0050g02500.t011e-140(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-60bHLH family protein